PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03307.50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 701aa    MW: 76641.9 Da    PI: 7.0998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03307.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.8e-08288308526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ GtC+ Gd C +aHg
  Jcr4S03307.50 288 PCPEFRK-GTCQKGDACEYAHG 308
                    8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.87E-1394176IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02298128IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.6E-1498197IPR020683Ankyrin repeat-containing domain
PfamPF127968.6E-898167IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.01898173IPR020683Ankyrin repeat-containing domain
CDDcd002044.14E-12100196No hitNo description
SMARTSM002480.077133165IPR002110Ankyrin repeat
PROSITE profilePS500889.511133168IPR002110Ankyrin repeat
SMARTSM003562.5E-4283309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197283310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4288309IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5288308IPR000571Zinc finger, CCCH-type
SMARTSM0035685318341IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812318342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MEKDAVFAYF GLWFVCPERN RVCAVVPRVN SSLQIPSWKT SLATQKDGIS SKCSVLLELA  60
ASDDLVGFQS EIEDKGLDVD ETSYWYGRRI GSKKMGFEQR TPLMIAAMFG STNVLKYITE  120
TNKVDVNRAS GLDKVTALHC AVAGAANSLV EIVKLLLDAS ADANRVDASG NKPADLFTPS  180
LKSPSNSRRK LVEMLLKGES LSEDEEEKLI MMSQPSKEGS EKKEYPIDVS LPDINNGIYG  240
TDEFRMYCFK VKPCSRAYSH DWTECPFVHP GENARRRDPK KYPYTCVPCP EFRKGTCQKG  300
DACEYAHGVF ESWLHPAQYR TRLCKDEIGC ARKVCFFAHK PEELRPVYAS TGSAMPSPKS  360
MSVSSMDMAT LSPLALGSSS LTLPAVSTPP MSPLAAATSS SPKSGGLWQN KVNLAPPALQ  420
LPGSRLKTAL CARDLDLEME LLGLENHANQ LQQQQLMDEI SSLSSPSCWS KDFNRIGDLK  480
PKNLDDVFGS LDPSLLSPLQ GMSLKPSTPT QLQSPTGLQI RQNMNQLRSS YPSNLSSSPV  540
RKPASYGFDS SAAVAAAMMN SRSSAFAQRS HSFIDRGAAT NRLGITAAAN SASMMSSNFS  600
NWSSPDGKLD WGVQGDELNK LKKSASFGFR SNSTPSTIAD VTLSNVDEPD VSWVNSLVKD  660
VPPVGSSLFG ADKQYNLSKG VRESLPPWME QMYIEQEQMV A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087294.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A067LJF00.0A0A067LJF0_JATCU; Uncharacterized protein
STRINGPOPTR_0008s06940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein